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Archive for the ‘New science’ Category

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Stewart Brand, on viruses and the scale of things

Thursday, June 9th, 2011
    “Everything about viruses is extreme,” Zimmer began. The number of viruses
    on Earth is estimated to be 1 followed by 31 zeroes. Small as they are, if
    you stacked them all up, the stack would reach 100 million light years. They
    are the planet’s most abundant organism by far.

    They’re fast. We take decades to reproduce. A flu virus can generate
    billions of itself in us within hours. And they evolve
    10,000 times faster than us, because they’re creatively sloppy about making
    copies of their genomes, and they readily combine genes among varieties when
    jointly infecting a cell. Each of us has four trillion viruses on board, in
    1,500 all-too-fungible varieties.

    Yet they can also be “time stealthy.” You may have a bout of childhood
    chickenpox that is over in days, but the viruses may hide in your nervous
    system and emerge decades later as shingles. HIV spreads inexorably because
    of the lag of months or years between infection and visible symptoms.

    The earliest record of a virus in human history is the smallpox marks you
    can see on the mummified face of Ramses V, who died in 1145 BCE.
    Viruses leave no fossils, but in a sense they ARE fossils, with the ancient
    gene sequences of retroviruses buried in the genomes of every creature
    they’ve infected over the ages. About 8 percent of our genome—some
    100,000 elements—comes from viruses, and some of those genes now work for
    us (enabling the mammalian placenta, for instance). One French scientist
    revived from our genome a functioning 2-million-year-extinct virus just by
    deducing the original code from the current variety in that stretch of DNA.

    For billions of years the planet’s life consisted solely of bacteria and
    their viruses, the bacteriophages. They became a planet force, and remain
    so today, determining the makeup of the atmosphere, among other things. Every
    day half of all the bacteria in the oceans are killed by phages. Some of
    the carbon from the bodies sinks to the bottom, some is freed up to
    fertilize other life. Ocean viruses cart around and transmit genes for
    photosynthesis to previously incapable
    microbes—10 percent of oceanic photosynthesis happens that way. If some
    day we have to geoengineer the atmosphere to manage climate change, we may
    want to employ the viruses that are already doing it.

    Virology will be revolutionizing science for decades to come. One body of
    investigation suggests that the so-called giant viruses may be a whole
    fourth domain of life (added to bacteria, archaea, and eukaryotes). As the
    ultimate parasite, viruses were assumed to come along after life evolved,
    but they might an instrument of that evolution. One hypothesis is that
    viruses took primordial RNA and generated DNA to better protect the
    genes. They might have created life as we know it, a long time ago.

    –Stewart Brand

Posted in Musings, New science | No Comments »

Using viruses to deliver upgrades to your brain

Tuesday, March 22nd, 2011

The use of viruses to deliver beneficial genes to upgrade your brain is very much a reality: check out this article from Nature this week:

read here: http://www.nature.com/news/2011/110317/full/news.2011.167.html

Last week saw the news that it is now possible to create superblood by taking it out of the body and using very clever, targeted gene therapy to upgrade the DNA. It’s currently being trialled in AIDS patients, making a subtle mutation to their white blood cells so that they’re more like the HIV-immune cells of so-called HIV controllers – people that can resist HIV attacks because of different ‘flags’ on their cells. Once upgraded, you infuse the blood cells back into the patients where they can start taking on HIV with newfound immunity.

read here: http://www.nature.com/news/2011/110301/full/471016a.html

The usage is therapeutic so far, but each year sees new approaches to blood doping in the Tour de France. How long until this becomes one? How long until someone creates a safe virus capable of boosting your brain functions, and sells it on the Internet? What happens when not just your organs are modified, but also the DNA capable of being passed on to your children (“germ line” modification) – would you leave them with a trust fund, or spend the money permanently making your progeny handsome geniuses?

So humans can now be patched and bugfixed. How long until we have open-source humans? Jokingly, the time is apparently already upon us – a user of popular software source code sharing, review and editing site GitHub uploaded his genome for ‘patching’. We don’t yet have widespread technology to implement the patches that are being written and suggested, but as gene therapy progresses and gets commercialised (and maybe even amateurised), we one day doubtless will.

What a bizarre feeling it must be, knowing that the open-source crowd can pore over the very blueprints to you and start imagining and coding “You, version 2.0“…

Posted in Musings, New science | No Comments »

Genetically engineering human tissues enters clinical age

Monday, March 7th, 2011

http://www.nature.com/news/2011/110301/full/471016a.html?WT.ec_id=NATURE-20110303

Here we go, people: medicine based on targeted genetic engineering human tissues is henceforth a reality.

In Phase I (early stage) medical trials, the blood of HIV sufferers was taken out, genetically engineered to make it more resistant to the virus, before pumping the super-blood back into the sufferers’ body.

Thanks to genome sequencing of those lucky few humans that are naturally resistant to HIV, we know that the virus relies on the sufferer having white blood cells that have the CCR5 ‘handle’ on their cell surface to pull itself in, copy itself, and kill the white blood cell (and repeat, ad mortem). So the blood, once extracted, had its CD4+ T cells isolated and their DNA modified by a special “zinc finger” protein capable of targeted gene editing.

We’re not talking about directly engineering adult humans (like Peter Parker’s genetic transformation into Spiderman after the mythical bite) – yet – because such a challenge is ethically very difficult, makes cancer more likely, and is technologically very hard to achieve.

Still – it presumably won’t be too long until this sort of blood engineering becomes the latest Tour De France blood doping scandal.

Posted in New science | No Comments »

Things you probably never knew toxoplasmosis could do to you

Monday, March 22nd, 2010

eat a cat's faeces? right now you're either feeling pretty kinky, or a bit primitive Mice and rats infected with toxoplasmosis are less scared of cats and can even start ‘deliberately’ hanging around areas where they can smell cats. Inevitably, that means they’ll get eaten, the cat will get the disease, and will help spread it around.

In humans, there is some evidence that toxoplasmosis is linked to schizophrenia.

Most amazingly, in women who get toxoplasmosis, the likelihood of a boy being born goes from slightly over 50% potentially all the way up to 72% – so for every 10 girls, 26 boys would be born.

If you have a specific blood type (Rh-), you’re 2.5 times more likely to have a car accident than uninfected people.

There’s controversial evidence that men become more anti-social, grumpy, risky/rebellious, but less curious – and that women become friendlier, keener to have sex, more outgoing, and might be considered more attractive by men.

In most healthy human beings, toxoplasmosis merely presents with flu-like symptoms, then sits dormant.

source

Posted in New science | No Comments »

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